Microarray Analysis Pipeline
The pipeline has been designed to automate standard working steps such as preprocessing, determination of differentially expressed genes or annotation.
Features:
- Systematic data management
- Standardized storage
- Standardized access and documentation
- Routine tasks
- Preprocessing:
vsn, median polish, add-on - Standards for quality control
Residual plots, Boxplots - Automation for efficiency
- Differential gene expression
- Overrepresentation analysis
- Supervised classification
- Communication with project partners
- Browsable results linked to public databases
- Reproducible and documented results
The pipeline was developed in cooperation with the "Computational Diagnostics Group" ot the University Regensburg: http://www-compdiag.uni-regensburg.de
Further questions should be addressed to : M. Hummel or M. Schmidberger